Spatial Derivative Estimation

Spatial derivative estimation is a method for quantifying how a measured signal changes across position, helping reveal local gradients and boundaries in spatial data. It typically compares neighboring measurements using finite-difference calculations or fits a smooth function before evaluating its rate of change, with accuracy influenced by sampling resolution and noise. In neuroscience, this approach can characterize spatial variations in neural activity, voltage, sensory representations, or imaging signals, supporting analysis of response fields and anatomical organization. Reliable spatial derivatives help researchers identify localized features and relate patterns of neural signals to underlying circuits and functional processes.

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Research

JoVE Journal - Biochemistry
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Spatial Molecular Imaging of the Glycome Using Mass Spectrometry

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Cited by 1 •

2025

This protocol details the key steps to enable rigorous and reproducible measurement of both glycogen and N-linked glycans using mass spectrometry imaging.

Education

JoVE Science Education - Psychology

Spatial Cueing

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2023

Source: Laboratory of Jonathan Flombaum—Johns Hopkins University Attention refers to the limited human ability to select some information for processing at the expense of other stimuli in the environment. Attention operates in all sensory modalities: vision, hearing, touch, even taste and smell. It is most often studied in the visual domain though. A common way to study visual attention is with a spatial cueing paradigm. This paradigm allows researchers to measure the consequences of focusing...

Mining Spatial Transcriptomics Datasets using DeepSpaceDB

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2025

This article introduces a protocol for using DeepSpaceDB, a dynamic, interactive database for spatial transcriptomics, offering analysis workflows and examples to explore tissue organization and disease-related gene expression.

Assessment of Spatial Lingual Tactile Sensitivity using a Gratings Orientation Test

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Cited by 2 •

2021

This work illustrates a standard procedure and threshold determination by the R-index to assess spatial lingual tactile sensitivity using a gratings orientation test.

Spatially Compact Arrangement of Larval Zebrafish Sections for Spatial Transcriptomic Analysis

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2025

Here, we present a method for aligning and cryosectioning multiple Zebrafish (Danio rerio) larvae samples and collecting them on a single slide for spatial transcriptomic analysis.

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