Simone Sidoli

Simone Sidoli

https://orcid.org/0000-0001-9073-6641

Epigenetics Program, University of Pennsylvania

Affiliated withUniversity of PennsylvaniaUniversity of Pennsylvania Perelman School of MedicineAlbert Einstein College of Medicine

Research Area

Biography

Simone Sidoli is an Assistant Professor at the Albert Einstein College of Medicine, Department of Biochemistry, and Scientific Director of the Einstein Proteomics Core. Dr. Sidoli applies proteomics to identify the composition and dynamics of chromatin. This includes the development of new quantitative methods to identify histone modifications, locus-specific proteomes, and biomarkers in disease. His lab is invested in innovating new 3D cell models to reduce the necessity of animal testing, and in advancing the use of minimally invasive devices to collect biopsies.

JoVE Journal Publications

ArticleTotal : 5
Year
Complete Workflow for Analysis of Histone Post-translational Modifications Using Bottom-up Mass Spectrometry: From Histone Extraction to Data Analysis
Publication title

Cited by 213

2016
2017
2022
2023
2025

Other Publications

Article
Year

Cell reports| PubMed ID: 27783950

2016

Journal of proteomics| PubMed ID: 22234360

2012

PLoS genetics| PubMed ID: 22570628

2012

Analytical chemistry| PubMed ID: 23889513

2013

Biochemical and biophysical research communications| PubMed ID: 24480439

2014

Journal of proteome research| PubMed ID: 24628298

2014

Molecular & cellular proteomics : MCP| PubMed ID: 24741113

2014

Cell reports| PubMed ID: 24857652

2014

Proteomics| PubMed ID: 25073878

2014

Genome research| PubMed ID: 25467431

2015

Molecular & cellular proteomics : MCP| PubMed ID: 25636311

2015

Proteomics| PubMed ID: 25641854

2015

Analytical chemistry| PubMed ID: 25719549

2015

Genes & development| PubMed ID: 25792596

2015

Molecular & cellular proteomics : MCP| PubMed ID: 25805797

2015

Journal of proteomics| PubMed ID: 25835965

2015

Epigenetics & chromatin| PubMed ID: 25878728

2015

Proteomics| PubMed ID: 26223514

2015

Expert review of proteomics| PubMed ID: 26400466

2015

Molecular & cellular proteomics : MCP| PubMed ID: 26424599

2015

Molecular cell| PubMed ID: 26439302

2015

Cell research| PubMed ID: 26470845

2015

Nucleic acids research| PubMed ID: 26476455

2015

Analytical chemistry| PubMed ID: 26505526

2015

Proteomics| PubMed ID: 26508544

2016

Genome research| PubMed ID: 26537359

2016

Proteomics| PubMed ID: 26631989

2016

Molecular & cellular proteomics : MCP| PubMed ID: 26785730

2016

BMC genomics| PubMed ID: 26847871

2016

Proteomics| PubMed ID: 27193262

2016

Molecular bioSystems| PubMed ID: 27301801

2016

Molecular & cellular proteomics : MCP| PubMed ID: 27302890

2016

Proteomics. Clinical applications| PubMed ID: 27672009

2017

Proteomics| PubMed ID: 27717184

2017

Molecular cell| PubMed ID: 27768875

2016

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 27854019

2017

The Journal of cell biology| PubMed ID: 27956468

2017

Cell reports| PubMed ID: 28052258

2017

Molecular & cellular proteomics : MCP| PubMed ID: 28179408

2017

Analytical chemistry| PubMed ID: 28194967

2017

Scientific reports| PubMed ID: 28338045

2017

Scientific reports| PubMed ID: 28377601

2017

Expert review of proteomics| PubMed ID: 28649883

2017

Epigenetics & chromatin| PubMed ID: 28683815

2017

Genes & development| PubMed ID: 28827399

2017

Scientific reports| PubMed ID: 28860605

2017

The Journal of biological chemistry| PubMed ID: 28916722

2017

Nature communications| PubMed ID: 28916805

2017

Journal of the American Society for Mass Spectrometry| PubMed ID: 31512222

2019

Scientific reports| PubMed ID: 31541121

2019

Nature communications| PubMed ID: 31624313

2019

Methods (San Diego, Calif.)| PubMed ID: 32070774

2020

Nature genetics| PubMed ID: 32139906

2020

Proteomics| PubMed ID: 32311217

2020

Nature communications| PubMed ID: 32376827

2020

Biology| PubMed ID: 32604817

2020

Cancer research| PubMed ID: 32641411

2020

Genome research| PubMed ID: 32747411

2020

eLife| PubMed ID: 32804637

2020

International journal of molecular sciences| PubMed ID: 32823483

2020

Molecular omics| PubMed ID: 32968743

2020

Nature genetics| PubMed ID: 32989324

2020

Nature genetics| PubMed ID: 33033384

2020

Molecular metabolism| PubMed ID: 33285300

2021

Nature| PubMed ID: 33299182

2021

PLoS pathogens| PubMed ID: 33370417

2020

eLife| PubMed ID: 33594971

2021

Bio-protocol| PubMed ID: 33659415

2020

Nature neuroscience| PubMed ID: 33723435

2021

Science (New York, N.Y.)| PubMed ID: 33833093

2021

Nature neuroscience| PubMed ID: 33833436

2021

Cell| PubMed ID: 34077751

2021

PLoS genetics| PubMed ID: 34181637

2021

Nucleic acids research| PubMed ID: 34428304

2021

iScience| PubMed ID: 34505004

2021

Analytica chimica acta| PubMed ID: 34538324

2021

Frontiers in molecular biosciences| PubMed ID: 34660696

2021

Molecular cell| PubMed ID: 34856123

2022

The Journal of infectious diseases| PubMed ID: 34932816

2022

eLife| PubMed ID: 34984976

2022

Cell host & microbe| PubMed ID: 34998466

2022

MethodsX| PubMed ID: 35004218

2021

Molecular omics| PubMed ID: 35044400

2022

Molecular & cellular proteomics : MCP| PubMed ID: 35051657

2022

Molecular cell| PubMed ID: 35202573

2022

Journal of medicinal chemistry| PubMed ID: 35324190

2022

Nature metabolism| PubMed ID: 35361955

2022

Scientific reports| PubMed ID: 35484384

2022

Science signaling| PubMed ID: 35380877

2022

mBio| PubMed ID: 35730903

2022

Biomedicines| PubMed ID: 35740279

2022

Nature cell biology| PubMed ID: 35787684

2022

Aging cell| PubMed ID: 36116133

2022

EMBO reports| PubMed ID: 36120829

2022

Journal of leukocyte biology| PubMed ID: 36205434

2022

Nature structural & molecular biology| PubMed ID: 36344844

2022

Epigenetics & chromatin| PubMed ID: 36411440

2022

Cancers| PubMed ID: 36672476

2023

Epigenetics & chromatin| PubMed ID: 36803422

2023

Analytical chemistry| PubMed ID: 36916610

2023

ACS infectious diseases| PubMed ID: 36920074

2023

ACS chemical biology| PubMed ID: 36947831

2023

The Journal of clinical investigation| PubMed ID: 37079384

2023

The Journal of clinical investigation| PubMed ID: 37097759

2023

Biochemical pharmacology| PubMed ID: 37127250

2023

Nature| PubMed ID: 37286593

2023

Cancer metastasis reviews| PubMed ID: 37286866

2023

Science translational medicine| PubMed ID: 37315110

2023

Nature cell biology| PubMed ID: 37386153

2023

Nature cell biology| PubMed ID: 37414849

2023

Cells| PubMed ID: 37443768

2023

iScience| PubMed ID: 37456851

2023

bioRxiv : the preprint server for biology| PubMed ID: 37461463

2023

Nature genetics| PubMed ID: 37488417

2023

Glia| PubMed ID: 37519044

2023

iScience| PubMed ID: 37670782

2023

Journal of the American Chemical Society| PubMed ID: 37703462

2023

bioRxiv : the preprint server for biology| PubMed ID: 37732252

2023

JACC. Basic to translational science| PubMed ID: 37791311

2023

Seminars in arthritis and rheumatism| PubMed ID: 37802003

2023

Proteomics| PubMed ID: 38059784

2024

Clinical cancer research : an official journal of the American Association for Cancer Research| PubMed ID: 38060213

2024

Frontiers in molecular biosciences| PubMed ID: 38074090

2023

bioRxiv : the preprint server for biology| PubMed ID: 38076924

2023

Mass spectrometry reviews| PubMed ID: 38149478

2024

Leukemia| PubMed ID: 38182819

2024

PLoS biology| PubMed ID: 38252619

2024

Genes & development| PubMed ID: 38286657

2024

EMBO reports| PubMed ID: 38347224

2024

bioRxiv : the preprint server for biology| PubMed ID: 38370789

2024

Cell stem cell| PubMed ID: 38402617

2024

Nature communications| PubMed ID: 38565851

2024

Nucleic acids research| PubMed ID: 38597673

2024

Science signaling| PubMed ID: 38626009

2024

The journals of gerontology. Series A, Biological sciences and medical sciences| PubMed ID: 38761362

2024

Circulation research| PubMed ID: 38899461

2024

Neuron| PubMed ID: 38959894

2024

Clinical proteomics| PubMed ID: 38961380

2024

Neurobiology of disease| PubMed ID: 39025270

2024

Science advances| PubMed ID: 39110797

2024

Chemical science| PubMed ID: 39148787

2024

bioRxiv : the preprint server for biology| PubMed ID: 39149374

2024

Science (New York, N.Y.)| PubMed ID: 39208110

2024

Nature communications| PubMed ID: 39237615

2024

Neuron| PubMed ID: 39353433

2024

Cardiovascular research| PubMed ID: 39373248

2024

bioRxiv : the preprint server for biology| PubMed ID: 39386730

2024

Nature communications| PubMed ID: 39419994

2024

Cancer cell| PubMed ID: 39454577

2024

Genes & development| PubMed ID: 39562138

2024

ACS medicinal chemistry letters| PubMed ID: 39563815

2024

bioRxiv : the preprint server for biology| PubMed ID: 39574755

2024

Nature cancer| PubMed ID: 39627554

2024

Molecular cell| PubMed ID: 39631394

2025

Genetics| PubMed ID: 39661453

2025

Clinical cancer research : an official journal of the American Association for Cancer Research| PubMed ID: 39704655

2025

Epigenomics| PubMed ID: 39716806

2025

Nature| PubMed ID: 39779849

2025

Journal of the American Chemical Society| PubMed ID: 39808475

2025

Analytical chemistry| PubMed ID: 39969248

2025

Journal of extracellular vesicles| PubMed ID: 39976275

2025

Journal of the American Heart Association| PubMed ID: 40079330

2025

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 40257557

2025

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 40257567

2025

Nature metabolism| PubMed ID: 40281362

2025

bioRxiv : the preprint server for biology| PubMed ID: 40321217

2025

bioRxiv : the preprint server for biology| PubMed ID: 40376090

2025

bioRxiv : the preprint server for biology| PubMed ID: 40475465

2025

Proteomics| PubMed ID: 40489056

2025

EMBO molecular medicine| PubMed ID: 40490560

2025

Research square| PubMed ID: 40671813

2025

bioRxiv : the preprint server for biology| PubMed ID: 40672221

2025

Molecular cell| PubMed ID: 40680746

2025

Proteomics| PubMed ID: 40766986

2025

bioRxiv : the preprint server for biology| PubMed ID: 40791365

2025

Progress in cardiovascular diseases| PubMed ID: 40840785

2025

Environmental pollution (Barking, Essex : 1987)| PubMed ID: 40846258

2025

mBio| PubMed ID: 40874616

2025

STAR protocols| PubMed ID: 40884789

2025

bioRxiv : the preprint server for biology| PubMed ID: 41000734

2025

Cancer discovery| PubMed ID: 41031953

2025

Molecular cell| PubMed ID: 41043390

2025

mBio| PubMed ID: 41065395

2025

Molecular cell| PubMed ID: 41086806

2025

Nature cell biology| PubMed ID: 41087566

2025

Life science alliance| PubMed ID: 41266110

2026

JCI insight| PubMed ID: 41364533

2025

Nature communications| PubMed ID: 41387402

2025

Scientific reports| PubMed ID: 41402425

2025

Genes & development| PubMed ID: 41412800

2025