Bacteria Separation

Bacteria separation is the isolation or enrichment of bacterial cells from mixed cultures, fluids, or suspended materials, enabling identification, recovery, and downstream analysis. Engineering approaches exploit differences in cell size, density, surface properties, charge, or molecular affinity through methods such as filtration, centrifugation, membrane separation, microfluidics, and magnetic capture; operating conditions determine separation efficiency and cell viability. These techniques support water and wastewater treatment, bioprocessing, food safety, diagnostics, and environmental monitoring. Improved separation systems can increase sample purity, reduce processing time, and enable selective recovery of target bacteria for cultivation, detection, or further engineering.

Bacteria Separation - Related Videos

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JoVE EoE - Bacterial Growth and Techniques

Separation of Bacteria by Capsule Amount Using a Discontinuous Density Gradient

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2025

Source: Feltwell, T., et.al. Separating Bacteria by Capsule Amount Using a Discontinuous Density Gradient. J. Vis. Exp. (2019)This video demonstrates the use of a discontinuous density gradient to separate bacterial strains based on capsule amount. By centrifuging a transposon mutant library through the gradient, bacteria with different capsule densities localize to distinct layers. The separated fractions can then be collected for downstream analysis.

Aptamer-Assisted Acoustophoresis for Microfluidic Separation of Gram-Negative Bacteria

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2025

Source: Choi, H. J., et al. Microfluidic Acoustophoresis for Flowthrough Separation of Gram-Negative Bacteria using Aptamer Affinity Beads. J. Vis. Exp. (2022)This video demonstrates the method of selectively separating Gram-negative bacteria from a mixed bacterial sample using aptamer-coated microbeads and acoustic forces within a microfluidic chip.

Microfluidic Acoustophoresis for Flowthrough Separation of Gram-Negative Bacteria using Aptamer Affinity Beads

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2022

This paper describesthe fabrication and operation of microfluidic acoustophoretic chips using the microfluidic acoustophoresis technique and aptamer-modified microbeads that can be used for fast, efficient isolation of Gram-negative bacteria from a medium.

Separation of Inner and Outer Membrane Fractions of Gram-Negative Bacteria

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2025

Source: Cian, M. B. et. al., Separation of the Cell Envelope for Gram-negative Bacteria into Inner and Outer Membrane Fractions with Technical Adjustments for Acinetobacter baumannii. J. Vis. Exp. (2020)This video demonstrates the separation of the inner and outer membrane fractions of Gram-negative bacteria using sucrose gradient ultracentrifugation. The membrane fractions are purified and stored at low temperatures for targeted analysis of membrane-specific components.

Research

JoVE Journal - Genetics
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Separating Bacteria by Capsule Amount Using a Discontinuous Density Gradient

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Cited by 14 •

2019

We demonstrate the use of discontinuous density gradients to separate bacterial populations based on capsule production. This method is used to compare capsule amount between cultures, isolate mutants with a specific capsule phenotype, or to identify capsule regulators. Described here is the optimization and running of the assay.

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