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Current Research Methods in Tight Junction Proteins 

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Ouban Abderrahman

Ouban Abderrahman

College of Medicine, Alfaisal University & King Faisal Specialist Hospital and Research Center

Dr Abderrahman Ouban is an Associate Professor of Pathology and an Experimental Pathology Scientist. His research focuses on tight-junction proteins, their role in disease states, and their use as biomarkers of prognosis and therapy. Dr Ouban received his Pathology residency training at the University of South Florida and followed that with a fellowship training in Transfusion Medicine at the Washington University in St Louis-Barnes Jewish Hospital Fellowship training program, completing a second fellowship at the University of Toronto Department of Molecular Oncology and Pathology in the Molecular Oncology of Cancer. His lab has been working on biomarker discovery in tight junction proteins for the past 4 years. Most recently he is focusing on innovation using formalin fixed-paraffin-embedded tissue for genomic analyses, specifically on the Oncoscan CNV Plus Assay and Infinium HD assay for methylation, and their possible use as high-through put arrays in diagnostic oncology.

Collection Overview

Tight junctions are critical structures for the stability of an organism. They are responsible for forming the seal that controls paracellular transport. This group of proteins came under increased scrutiny with the discovery of claudin proteins in the 1990s. Tight junction proteins are involved in numerous disorders including cancer, inflammation, congenital diseases, and infertility. In-depth understanding of the interactions of components of the tight junction proteins system provides insight into their roles in disease development and progression. This collection brings together several of the techniques developed to study the intricate aspects of tight junction proteins, including identification of different tight junction proteins which interact with each other and quantifying this interaction, assessing the integrity of the epithelial barrier of the intestinal wall, quantifying the adhesion forces exerted by tight junctions at the cellular level, characterizing the interaction kinetics of tight junction proteins at the molecular level, assessing the cellular fencing function provided by the tight junction proteins, determining the role of certain tight junction proteins in cellular life and death, and identifying critical regions within the genome for regulation of claudin genes. 

Examples of methods to be used in this collection are: tracer-based microscopic assays, immunogold labelling to identify cellular localization of tight junction proteins, gene reporter assays, siRNA against specific tight junction proteins, confocal immunofluorescence, in-vivo imaging of tight junction proteins, NGS, coculture methods, dual micropipette assay, single molecular force spectroscopy using atomic force microscopy, transepithelial electrical resistance (TER) method, multiplex IHC, fluorescence microscopy (e.g. immunofluorescence, FRET, super-resolution microscopy), biophysical approaches (X-ray crystallography, NMR, etc.) and microarray-based techniques (i.e. tissue and protein arrays).

 

Articles

Functional Assessment of Intestinal Tight Junction Barrier and Ion Permeability in Native Tissue by Ussing Chamber Technique
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Functional Assessment of Intestinal Tight Junction Barrier and Ion Permeability in Native Tissue by Ussing Chamber Technique

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Cited by 11

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2021

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Abstracts

SALL4 IHC Multiplex

Robert Duran*1

1Alfaisal University

Culture of intestinal epithelial cell monolayer and calcium switch assay for evaluation of tight junction assembly

Pawin Pongkorpsakol*1

1Faculty of Medicine and Public Health, HRH Princess Chulabhorn College of Medical Science, Chulabhorn Royal Academy