Docking Station Peptide

A docking station peptide is a short, engineered amino acid sequence that provides a defined binding site for recruiting and positioning proteins, biomolecules, or synthetic components. Its function depends on selective molecular recognition, in which the peptide’s sequence and three-dimensional structure promote complementary interactions such as hydrogen bonding, electrostatic attraction, and hydrophobic association. In bioengineering, docking station peptides can organize molecular components on scaffolds, support modular biomaterial design, and improve control over biosensors, drug-delivery systems, and tissue-engineering constructs. Their tunable binding behavior makes them useful for studying biomolecular assembly and developing precise, adaptable interfaces between biological and engineered systems.

Docking Station Peptide - Related Videos

Research

JoVE Journal - Medicine

Screening Traditional Chinese Medicine Compounds for Inhibiting UCHL3 Activity Based on Molecular Docking and Deubiquitinating Enzyme Probe Technology

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2024

The experiment used here shows a method of molecular docking combined with probe technologies to predict and validate the interaction between small molecules of traditional Chinese medicine and protein targets.

Immunoaffinity Based Extraction of Ubiquitinylated Peptides: A Technique to Selectively Extract Ubiquitin Tagged Peptides from Purified Peptide Fractions

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2023

This video describes a method to extract and purify ubiquitinylated peptides containing remnant di-glycine peptides from a complex peptide mixture. The presented method may help in identifying original ubiquitination sites in the protein.

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis

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Cited by 1 •

2025

Computational methods hold promises for expediting drug discovery, yet they frequently overlook the dynamic nature of protein structures. Here, we discuss ensemble-based docking analysis to indirectly incorporate protein flexibility, potentially improving the accuracy and reliability of drug discovery efforts.

Peptide Purification: An RP-HPLC-based Technique to Extract Peptides from Digested Protein Lysates

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2023

In this video, we demonstrate reversed-phase high-performance liquid chromatography to purify peptides from a digested protein lysate mixture. These purified peptides are then lyophilized and stored for downstream applications. Analysis of peptides can help understand the mechanics involved in cellular signaling and cancer.

Measuring Peptide Translocation into Large Unilamellar Vesicles

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Cited by 9 •

2012

This protocol details a method for the quantitative measure of peptide translocation into large unilamellar lipid vesicles. This method also provides information about the rate of membrane translocation and can be used to identify peptides that efficiently and spontaneously cross lipid bilayers.

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