Brain Cell Imaging

Brain cell imaging comprises techniques that visualize the structure, activity, and interactions of cells in the brain, making otherwise inaccessible neural processes measurable. Depending on the method, researchers use fluorescent labels, genetically encoded indicators, or calcium-sensitive dyes with light microscopy to capture changes in neurons and glial cells, often in living tissue. These approaches can reveal neuronal connectivity, signaling dynamics, cell morphology, and responses to sensory or pharmacological stimuli. In neuroscience, brain cell imaging supports studies of neural circuits, development, disease mechanisms, and treatment effects, linking cellular events to behavior and advancing understanding of disorders such as epilepsy, neurodegeneration, and brain tumors.

Brain Cell Imaging - Related Videos

Research

JoVE Journal - Biology

Live Imaging of Microtubule Dynamics in Glioblastoma Cells Invading the Zebrafish Brain

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Cited by 7 •

2022

We report a technique permitting live imaging of microtubule dynamics in glioblastoma (GBM) cells invading a vertebrate brain tissue. Coupling the orthotopic injection of fluorescently tagged GBM cells into a transparent zebrafish brain with high-resolution intravital imaging allows the measurement of cytoskeleton dynamics during in situ cancer invasion.

A Scanning Electron Microscopy-Compatible Optical Imaging Method for Mesoscopic All-Cell Brain Mapping

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2026

We introduced a novel imaging technique called Optical Multilayer Interference Tomography (OMLIT), which enables unbiased imaging of all cells in brain specimens at the mesoscale and can be seamlessly integrated into the imaging workflow of tape-based serial scanning electron microscopy on the same sample.

Immunofluorescence Staining of Drosophila Brains for the Single-Cell Imaging of Glial Cells

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2025

This video demonstrates the immunofluorescence staining of a transgenic Drosophila brain for single-cell imaging of glial cells. The brain expresses membrane-targeted proteins fused with different combinations of antigenic epitopes under the control of a glial-specific recombinase system. The isolated and fixed brains are stained with primary antibodies specific to the antigenic epitopes, followed by fluorophore-conjugated secondary antibodies. This labeling enables the simultaneous imaging of...

Live Imaging of Ependymal Cell Ciliary Activity in a Mouse Brain Section

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2025

Source: Al Omran, A. J., et al. Live Imaging of the Ependymal Cilia in the Lateral Ventricles of the Mouse Brain. J. Vis. Exp. (2015). This video demonstrates a live-imaging technique using differential interference contrast (DIC) microscopy to observe the beating of ependymal cilia in sagittal mouse brain sections. Ependymal cilia propel cerebrospinal fluid (CSF), and their activity is recorded in brain sections maintained in a nutrient-rich medium and imaged in a climate-controlled chamber.

Whole-Brain Single-Cell Imaging and Analysis of Intact Neonatal Mouse Brains Using MRI, Tissue Clearing, and Light-Sheet Microscopy

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Cited by 2 •

2022

This protocol describes methods for conducting magnetic resonance imaging, clearing, and immunolabeling of intact mouse brains using iDISCO+, followed by a detailed description of imaging using light-sheet microscopy, and downstream analyses using NuMorph.

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