Filter Binding Assay

A filter binding assay is a biochemical method that measures how strongly a ligand binds to a receptor or other target, making it useful for characterizing neurotransmitter systems in neuroscience. In a typical assay, receptor-containing membranes are incubated with a labeled ligand, captured on a glass-fiber filter, and washed to remove unbound molecules; retained radioactivity reflects ligand-target binding. Researchers can vary ligand concentration to estimate affinity and binding-site density, or add competing compounds to evaluate selectivity and pharmacological activity. These measurements support the study of receptor function and the development of drugs that modulate neuronal signaling.

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JoVE EoE - Biomolecular Interaction Detection Techniques

Competition Binding Assay to Study Competing GTPase-Binding Protein Partners

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2025

This video demonstrates a competition assay to study GTPase-binding protein partners. Utilizing nucleotide-bound GTPase protein immobilized on magnetic beads, the competitive binding between two interacting protein partners for the same binding site on the GTPase can be studied to assess the binding affinities of the protein partners.

Actin Co-Sedimentation Assay; for the Analysis of Protein Binding to F-Actin

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Cited by 18 •

2008

Proteins bind to filamentous actin (F-actin) through distinct actin binding modules. In this video we demonstrate the procedure of actin co-sedimentation, which is an in vitro assay routinely used to analyze proteins or specific domains that bind F-actin.

SELEX-Based In Vitro Binding Assay to Identify RNA-Protein Interactions

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2025

In this video, we describe the systematic evolution of ligands by the exponential enrichment (SELEX) method to identify specific RNA-binding sequences for a target protein of interest. The protein is incubated with a large pool of randomized RNA sequences, and the protein-binding RNA sequences are isolated, PCR-amplified, and sequenced to identify their protein-binding sites.

Concanavalin A-Based Sedimentation Assay to Measure Substrate Binding of Glucan Phosphatases

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2022

This method describes a lectin-based in vitro sedimentation assay to quantify the binding affinity of glucan phosphatase and amylopectin. This co-sedimentation assay is reliable for measuring glucan phosphatase substrate binding and can be applied to various solubilized glucan substrates.

A High Throughput MHC II Binding Assay for Quantitative Analysis of Peptide Epitopes

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Cited by 20 •

2014

Biochemical assays with recombinant human MHC II molecules can provide rapid, quantitative insights into immunogenic epitope identification, deletion, or design. Here, a peptide-MHC II binding assay scaled to 384-well plates is described. This cost effective format should prove useful in the fields of protein deimmunization and vaccine design and development.

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