Label-free Quantification

Label-free quantification is the measurement of biological structures, signals, or changes without fluorescent dyes, antibodies, or other external labels, reducing perturbation and simplifying analysis. In neuroscience, it uses intrinsic properties such as cell morphology, optical contrast, refractive index, or mass to generate quantitative data, often through microscopy and computational image analysis. This approach can track neuronal growth, synaptic structure, cell viability, and responses to experimental conditions while preserving native samples for longitudinal study. By limiting labeling-related toxicity, bleaching, and signal interference, label-free quantification supports more reproducible investigations of neural development, disease mechanisms, and potential therapeutics.

Label-free Quantification - Related Videos

Research

JoVE Journal - Biology

Automated Imaging and Analysis for the Quantification of Fluorescently Labeled Macropinosomes

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Cited by 7 •

2021

Automated assays using multi-well microplates are advantageous approaches for identifying pathway regulators by allowing the assessment of a multitude of conditions in a single experiment. Here, we have adapted the well-established macropinosome imaging and quantification protocol to a 96-well microplate format and provide a comprehensive outline for automation using a multi-mode plate reader.

"Cell Surface Capture" Workflow for Label-Free Quantification of the Cell Surface Proteome

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Cited by 3 •

2023

Here, we describe a proteomics workflow for characterization of the cell surface proteome of various cell types. This workflow includes cell surface protein enrichment, subsequent sample preparation, analysis using an LC-MS/MS platform, and data processing with specialized software.

Simultaneous Label-Free Autofluorescence Multi-Harmonic Microscopy

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Cited by 6 •

2025

This protocol presents a step-by-step guide for the Simultaneous Label-free Autofluorescence Multi-harmonic (SLAM) microscopic technique, including details on how to generate the laser light source, prepare a tissue sample, conduct imaging, and analyze the data. SLAM advances nonlinear microscopy by measuring four complementary label-free contrasts to investigate the tissue microenvironment.

Proteome-wide Quantification of Labeling Homogeneity at the Single Molecule Level

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Cited by 1 •

2019

Here, we present a protocol to assess the labeling homogeneity for each protein species in a complex protein sample at the single molecule level.

Magnetic Resonance Imaging Quantification of Pulmonary Perfusion using Calibrated Arterial Spin Labeling

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Cited by 18 •

2011

A MR imaging method to study the distribution of pulmonary blood flow under a variety of physiological conditions, in this case exposure to three different inspired oxygen concentrations: hypoxia, normoxia, and hyperoxia, is described. This technique utilizes human pulmonary physiology research techniques in an MR scanning environment.

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