The fruit fly Drosophila melanogaster is a widely used model organism in developmental biology, evolution, behavior, and biomedical research, including the study of cancer and other human diseases1,2. Many fundamental cellular signaling pathways are highly conserved between Drosophila and vertebrates, making this model system particularly valuable for investigating conserved biological mechanisms in vivo.
In this protocol, the Drosophila wing imaginal disc is used as a model system to study membrane-associated dynamics within the Wingless (Wg)/Wnt signaling pathway. Many developmental signaling pathways rely on tightly regulated secretion, membrane localization, endocytosis, and intracellular trafficking of signaling molecules3. This is also the case at the dorsoventral (DV) boundary of the wing imaginal disc, where Wg is secreted from producing cells at the apical membrane and transported to neighboring receiving cells through interactions with glypicans4,5,6,7. In recipient cells, Wg binds to Frizzled receptors and activates downstream Wnt signaling. In addition to the pool of Wg that is transported away from the DV boundary, a fraction of Wg is re-internalized by producing cells and trafficked through the endosomal system to distinct intracellular destinations8,9,10. The Wg-producing cells at the DV boundary therefore provide an excellent model for investigating membrane trafficking, secretion dynamics, and the cellular mechanisms that regulate signalling activity in vivo.
However, the highly columnar architecture of imaginal disc epithelial cells makes visualization challenging, requiring higher, more isotropic resolution than conventional confocal microscopy can provide to resolve individual vesicles. To overcome these limitations, we optimized tissue preparation, staining, and imaging conditions for super-resolution nanoscopy in intact Drosophila tissues. Specifically, we established a workflow for three-dimensional stimulated emission depletion (3D STED) nanoscopy that enables orthogonal visualization of membrane-associated protein localization along the apical-basal axis of the epithelium11,12. 3D STED is particularly well suited for this application because it provides improved axial resolution compared with conventional confocal microscopy, enabling the visualization of fine subcellular structures in densely packed tissues13,14. Using this approach, we analyzed the apical membrane region of Wg-secreting cells at the DV boundary of the wing imaginal disc and detected Wg at the apical membrane alongside other membrane-associated proteins, such as Discs large 1 (Dlg1) or Evenness interrupted/Wntless (Evi/Wls).
To further investigate protein trafficking dynamics, this imaging workflow was combined with a previously established uptake assay15. This assay enables the selective detection of proteins that have undergone secretion and subsequent re-internalization within a defined time window, thereby visualizing a dynamic pool of proteins trafficking through the plasma membrane. To expand its utility, the Uptake assay was combined with pharmacological perturbations, allowing the analysis of how specific cellular processes influence membrane trafficking dynamics. Together, these approaches provide a powerful framework for studying protein trafficking, secretion, and signaling mechanisms in their native tissue context at high spatial resolution.
Furthermore, the protocol is compatible with a wide range of staining approaches, including standard immunofluorescence protocols. The incorporation of fluorescent dyes is also feasible, further expanding the range of cellular structures and molecular targets that can be visualized. In all cases, fluorophores should be selected for compatibility with STED nanoscopy. Although the present protocol focuses on two-color (red and far-red) 3D STED imaging, the workflow can readily be adapted to additional fluorophores and alternative imaging configurations, thereby increasing its flexibility for diverse experimental applications.
Together, this protocol establishes a versatile framework for combining STED super-resolution nanoscopy with functional perturbation approaches in intact Drosophila tissues. The workflow provides a foundation for future studies investigating membrane organization, protein trafficking, and signaling dynamics at subcellular resolution within complex tissue environments.