Dna Assay

A DNA assay is a laboratory method for detecting, measuring, or characterizing DNA, making it a foundation for genetic analysis and bioengineering research. Depending on its design, the assay uses complementary base pairing to recognize a target sequence, then produces a measurable signal through amplification, fluorescence, enzymatic reactions, or another readout. Researchers use DNA assays to verify engineered constructs, quantify nucleic acids, identify genetic variants, and monitor biological systems. Reliable assay design and controls help distinguish specific target signals from background, supporting applications in diagnostics, synthetic biology, bioprocess development, and quality assessment.

Dna Assay - Related Videos

Research

JoVE Journal - Neuroscience

Assaying DNA Damage in Hippocampal Neurons Using the Comet Assay

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Cited by 21 •

2012

The comet assay is an efficient way of detecting single- and double-strand breaks, including alkali-labile sites and DNA-DNA/DNA-protein cross-links on the DNA in all cells including hippocampal neurons. The method takes advantage of the differential migration of DNA in an electric field due to differences in amount of DNA damage.

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors

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2022

DNA methyltransferases are potential cancer drug targets. Here, a protocol is presented to assess small molecules for DNA methyltransferase inhibition. This assay utilizes an endonuclease to couple DNA methylation to fluorescence generation and allows for enzyme activity to be monitored in real...

Research

JoVE Journal - Biology

Demonstration of the DNA Fiber Assay for Investigating DNA Damage and Repair Dynamics Induced by Nanoparticles

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Cited by 1 •

2023

The methodology assists in the analysis of variation in DNA replication dynamics in the presence of nanoparticles. Different methodologies can be adopted based on the cytotoxicity level of the material of interest. In addition, a description of the image analysis is provided to help in DNA fiber analysis.

In Vivo Alkaline Comet Assay and Enzyme-modified Alkaline Comet Assay for Measuring DNA Strand Breaks and Oxidative DNA Damage in Rat Liver

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Cited by 16 •

2016

The alkaline comet assay measures DNA strand breaks in eukaryotic cells. By adding an Endonuclease III or human 8-oxoguanine-DNA-N-glycosylase digestion step, the assay can efficiently detect oxidative DNA damage. We describe methods for using these assays to detect DNA damage in rat liver.

Research

JoVE Journal - Biology
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A High-Throughput Comet Assay Approach for Assessing Cellular DNA Damage

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Cited by 14 •

2022

The comet assay is a popular means of detecting DNA damage. This study describes an approach to running slides in representative variants of the comet assay. This approach significantly increased the number of samples while decreasing assay run-time, the number of slide manipulations, and the risk of damage to gels.

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