Dna Molecule Imaging

DNA molecule imaging is the visualization of DNA structure, organization, and behavior using optical or nanoscale imaging methods, providing direct insight into genetic material that is otherwise invisible. In bioengineering, researchers commonly attach fluorescent probes or labels to specific DNA sequences and detect their position, movement, or interactions with microscopy, while controlling sample preparation and imaging conditions to preserve molecular information. These approaches support genome mapping, gene regulation studies, DNA-based diagnostics, and the design of engineered biomolecular systems. By connecting molecular structure with function, DNA imaging helps clarify how genetic information is organized and enables more precise tools for biotechnology and biomedical research.

Dna Molecule Imaging - Related Videos

Research

JoVE Journal - Biochemistry

Single-Molecule Imaging of EWS-FLI1 Condensates Assembling on DNA

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Cited by 1 •

2021

Here, we describe the use of the single-molecule imaging method, DNA Curtains, to study the biophysical mechanism of EWS-FLI1 condensates assembling on DNA.

Research

JoVE Journal - Biology
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Single-Molecule Fluorescence Visualization of DNA Polymerase Dynamics at G-Quadruplexes

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2025

This protocol outlines a fluorescence microscopy-based single-molecule DNA replication assay, enabling real-time visualization of interactions between DNA polymerases and obstacles such as G-quadruplex structures.

Combining Single-molecule Manipulation and Imaging for the Study of Protein-DNA Interactions

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Cited by 10 •

2014

Here we describe the instrumentation and methods for detecting single fluorescently-labeled protein molecules interacting with a single DNA molecule suspended between two optically trapped microspheres.

Single-Molecule Imaging to Visualize Fusion Protein Condensates Assembly on DNA Curtains

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2025

This video describes a method to visualize the assembly of fusion protein condensates on DNA molecules at specific loci using single-molecule imaging. These condensates are formed due to LCD-LCD and LCD-DBD interactions, which allow for the recruitment of RNA polymerase II and enhanced gene transcription.

Studying DNA Looping by Single-Molecule FRET

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Cited by 13 •

2014

This study presents a detailed experimental procedure to measure looping dynamics of double-stranded DNA using single-molecule Fluorescence Resonance Energy Transfer (FRET). The protocol also describes how to extract the looping probability density called the J factor.

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